[PDF][PDF] Evaluation of DNA methylation episignatures for diagnosis and phenotype correlations in 42 Mendelian neurodevelopmental disorders

E Aref-Eshghi, J Kerkhof, VP Pedro… - The American Journal of …, 2020 - cell.com
Genetic syndromes frequently present with overlapping clinical features and inconclusive or
ambiguous genetic findings which can confound accurate diagnosis and clinical …

[HTML][HTML] Clinical epigenomics: genome-wide DNA methylation analysis for the diagnosis of Mendelian disorders

B Sadikovic, MA Levy, J Kerkhof, E Aref-Eshghi… - Genetics in …, 2021 - nature.com
Purpose We describe the clinical implementation of genome-wide DNA methylation analysis
in rare disorders across the EpiSign diagnostic laboratory network and the assessment of …

Backtesting for risk-based regulatory capital

J Kerkhof, B Melenberg - Journal of Banking & Finance, 2004 - Elsevier
In this paper we present a framework for backtesting all currently popular risk measurement
methods for quantifying market risk (including value-at-risk and expected shortfall) using the …

[PDF][PDF] Diagnostic utility of genome-wide DNA methylation testing in genetically unsolved individuals with suspected hereditary conditions

…, L Brady, DA Carere, MA Levy, J Kerkhof… - The American Journal of …, 2019 - cell.com
Conventional genetic testing of individuals with neurodevelopmental presentations and
congenital anomalies (ND/CAs), ie, the analysis of sequence and copy number variants, leaves …

[HTML][HTML] Clinical validation of copy number variant detection from targeted next-generation sequencing panels

J Kerkhof, LC Schenkel, J Reilly, S McRobbie… - The Journal of Molecular …, 2017 - Elsevier
Next-generation sequencing (NGS) technology has rapidly replaced Sanger sequencing in
the assessment of sequence variations in clinical genetics laboratories. One major limitation …

Measles outbreak among previously immunized healthcare workers, the Netherlands, 2014

…, ND van Burgel, J Kerkhof, J Sane… - The Journal of …, 2016 - academic.oup.com
Background We investigated a measles outbreak among healthcare workers (HCWs) by
assessing laboratory characteristics, measles vaccine effectiveness, and serological correlates …

[PDF][PDF] Novel diagnostic DNA methylation episignatures expand and refine the epigenetic landscapes of Mendelian disorders

MA Levy, H McConkey, J Kerkhof… - Human Genetics and …, 2022 - cell.com
Overlapping clinical phenotypes and an expanding breadth and complexity of genomic
associations are a growing challenge in the diagnosis and clinical management of Mendelian …

Model risk and capital reserves

J Kerkhof, B Melenberg, H Schumacher - Journal of Banking & Finance, 2010 - Elsevier
We propose a procedure to take model risk into account in the computation of capital reserves.
This addresses the need to make the allocation of capital reserves to positions in given …

Functional correlation of genome‐wide DNA methylation profiles in genetic neurodevelopmental disorders

…, H McConkey, E Pranckeviciene, J Kerkhof… - Human …, 2022 - Wiley Online Library
An expanding range of genetic syndromes are characterized by genome‐wide disruptions
in DNA methylation profiles referred to as episignatures. Episignatures are distinct, highly …

[HTML][HTML] Gene domain-specific DNA methylation episignatures highlight distinct molecular entities of ADNP syndrome

…, H Hakonarson, LA Demmer, MA Levy, J Kerkhof… - Clinical …, 2019 - Springer
Background ADNP syndrome is a rare Mendelian disorder characterized by global developmental
delay, intellectual disability, and autism. It is caused by truncating mutations in ADNP, …